PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1961_p5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 160aa    MW: 18545.9 Da    PI: 10.1517
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1961_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.5e-171568352
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                k  ++t+eq+e+Le+l++ +++ps  +r++L ++     +++ +q+kvWFqNrR
  RrC1961_p5 15 KYVRYTPEQVEALERLYNDCPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRR 68
                5679************************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.8151068IPR001356Homeobox domain
SMARTSM003893.2E-111278IPR001356Homeobox domain
SuperFamilySSF466892.92E-141469IPR009057Homeodomain-like
PfamPF000461.2E-141568IPR001356Homeobox domain
CDDcd000862.57E-121568No hitNo description
Gene3DG3DSA:1.10.10.603.8E-161768IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGGGSNSSHN IDNGKYVRYT PEQVEALERL YNDCPKPSSM RRQQLIREYP ILSNIEPKQI  60
KVWFQNRRSF SLLLIKKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF  120
RQHPQNQGNL ATTDTSCESV VTSGQHHLTP QHQPRDASPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412926e-89AJ441292.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 8 (hb-8 gene).
GenBankAL1615826e-89AL161582.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78.
GenBankAY0996316e-89AY099631.1 Arabidopsis thaliana HD-zip transcription factor (athb-8) (At4g32880) mRNA, complete cds.
GenBankBT0087986e-89BT008798.1 Arabidopsis thaliana At4g32880 gene, complete cds.
GenBankCP0026876e-89CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ508516e-89Z50851.1 A.thaliana athb-8 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125299.11e-101PREDICTED: homeobox-leucine zipper protein ATHB-8
RefseqXP_009125305.11e-101PREDICTED: homeobox-leucine zipper protein ATHB-8
RefseqXP_013660015.11e-101PREDICTED: homeobox-leucine zipper protein ATHB-8
RefseqXP_013660082.11e-101PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391231e-101ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0D3A2G01e-102A0A0D3A2G0_BRAOL; Uncharacterized protein
STRINGBra011392.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1807459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.11e-103homeobox gene 8